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  "Title": "Tools for Performing Pharmacokinetic-Pharmacodynamic Simulations",
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    "pop_regimen",
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    "read_model_json",
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      "title": "PK dataset",
      "object": "pkdata",
      "class": [
        "data.frame"
      ],
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        "ID",
        "TIME",
        "DV",
        "AMT",
        "CMT",
        "MDV",
        "EVID",
        "WT",
        "CRCL",
        "AGE",
        "SEX",
        "CENT"
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      "rows": 624,
      "table": true,
      "tojson": true
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      "title": "Put vector values in quotes",
      "topics": [
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      "title": "Add residual variability to the dependent variable",
      "topics": [
        "add_ruv"
      ]
    },
    {
      "page": "add_ruv_to_quantile",
      "title": "Calculate the increase in a specific quantile for a distribution on y when residual variability is added",
      "topics": [
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      ]
    },
    {
      "page": "adherence_binomial",
      "title": "Binomial adherence",
      "topics": [
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      ]
    },
    {
      "page": "adherence_markov",
      "title": "Markov adherence model",
      "topics": [
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      ]
    },
    {
      "page": "advan",
      "title": "ADVAN-style functions to calculate linear PK systems",
      "topics": [
        "advan"
      ]
    },
    {
      "page": "advan_create_data",
      "title": "Create ADVAN-style dataset",
      "topics": [
        "advan_create_data"
      ]
    },
    {
      "page": "advan_parse_output",
      "title": "Internal function to parse the raw output from ADVAN-style functions",
      "topics": [
        "advan_parse_output"
      ]
    },
    {
      "page": "advan_process_infusion_doses",
      "title": "Add column RATEALL to ADVAN-style dataset to handle infusions",
      "topics": [
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      ]
    },
    {
      "page": "apply_duration_scale",
      "title": "Apply infusion duration scale to a regimen",
      "topics": [
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      ]
    },
    {
      "page": "available_default_literature_models",
      "title": "See models from the literature available for installation",
      "topics": [
        "available_default_literature_models"
      ]
    },
    {
      "page": "calc_auc_analytic",
      "title": "Convenience function to calculate the AUC based on PK model parameters at any given moment, for linear iv models.",
      "topics": [
        "calc_auc_analytic"
      ]
    },
    {
      "page": "calc_dydP",
      "title": "Calculate derivative",
      "topics": [
        "calc_dydP"
      ]
    },
    {
      "page": "calc_ss_analytic",
      "title": "Returns the state of a linear PK system at steady state (trough) using analytics equations (so for linear PK systems only).",
      "topics": [
        "calc_ss_analytic"
      ]
    },
    {
      "page": "calculate_parameters",
      "title": "Calculate model-specific variables using a dummy call to sim_ode()",
      "topics": [
        "calculate_parameters"
      ]
    },
    {
      "page": "check_obs_input",
      "title": "Checks obs input for valid combinations of cmt, var, scale",
      "topics": [
        "check_obs_input"
      ]
    },
    {
      "page": "compile_sim_cpp",
      "title": "Compile ODE model to c++ function",
      "topics": [
        "compile_sim_cpp"
      ]
    },
    {
      "page": "covariate_last_obs_only",
      "title": "Use only last observed covariate values",
      "topics": [
        "covariate_last_obs_only"
      ]
    },
    {
      "page": "covariates_table_to_list",
      "title": "Convert covariate table specified as data.frame",
      "topics": [
        "covariates_table_to_list"
      ]
    },
    {
      "page": "cv_to_omega",
      "title": "Create lower-diagonal omega matrix from CV for parameter estimates",
      "topics": [
        "cv_to_omega"
      ]
    },
    {
      "page": "detect_ode_syntax",
      "title": "Auto-detect the syntax for the ODE code",
      "topics": [
        "detect_ode_syntax"
      ]
    },
    {
      "page": "f_cov",
      "title": "covariate function builder",
      "topics": [
        "f_cov"
      ]
    },
    {
      "page": "get_fixed_parameters",
      "title": "Get fixed parameters from model definition.",
      "topics": [
        "get_fixed_parameters"
      ]
    },
    {
      "page": "get_model_info",
      "title": "Functions for getting information about a model",
      "topics": [
        "get_model_auc_compartment",
        "get_model_covariates",
        "get_model_fixed_parameters",
        "get_model_info",
        "get_model_iov",
        "get_model_linearity",
        "get_model_parameters",
        "get_model_structure"
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    },
    {
      "page": "get_ode_model_size",
      "title": "Get the number of states in the ODE from the code code C++ code for model",
      "topics": [
        "get_ode_model_size"
      ]
    },
    {
      "page": "get_parameters_from_code",
      "title": "Get model parameters from code",
      "topics": [
        "get_parameters_from_code"
      ]
    },
    {
      "page": "get_var_y",
      "title": "Get expected variance/sd/ci of dependent variable based on PKPDsim model, parameters, and regimen",
      "topics": [
        "get_var_y"
      ]
    },
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